Gregor-Mendel-Institute SNPmatch issues

Gregor-Mendel-Institute / SNPmatch

A simple python library to identify the most likely strain from the population

https://arageno.gmi.oeaw.ac.at/

MIT License

9 stars 5 forks source link

issues

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Update setup.py with hmmlearn

#20 ellisztamas closed 8 months ago
0
Link to database is incorrect

#19 JoseMMuino closed 1 year ago
1
Error when providing data without PL

#18 dovivi opened 2 years ago
0
Incongruities at program results

#17 dukelheit opened 3 years ago
3
An error occurs while using recommended version of scikit-allel (0.20.3)

#16 dukelheit closed 4 years ago
1
Problem with chr names are sorted by default in np.unique

#15 rbpisupati closed 4 years ago
0
Generalize genotype_cross based on chromosome names in input

#14 rbpisupati closed 5 years ago
0
Different results when input is shuffled

#13 davetang closed 5 years ago
5
Parsing VCF files filters out non integer Chromosomes

#12 rbpisupati closed 6 years ago
0
TypeError in JSON file output of genotyper inbred

#11 rbpisupati closed 6 years ago
0
error when using snpmatch, throw error if bcftools doesnt exist in the path

#10 vinay104 closed 6 years ago
21
SNPmatch error

#9 wyim-pgl closed 6 years ago
1
SNPmatch error

#8 wyim-pgl closed 6 years ago
4
vcfnp package has been deprecated!

#7 rbpisupati closed 7 years ago
2
Trouble creating SNP database files

#6 blthree closed 7 years ago
7
Output not only overlap in percentage but also absolute value

#5 timeu closed 7 years ago
0
Add case and interpretation to parse genotype json

#4 timeu closed 7 years ago
0
Add flag to distinguish cases in the identify statistics

#3 timeu closed 7 years ago
1
Update snpmatch.py

#2 timeu closed 7 years ago
0
Make sure to output ERROR log messages

#1 timeu closed 7 years ago
0