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GregorySchwartz / multiomics-single-cell-t1d

Supplementary code for paper
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cell ID corresponding patient ID #10

Closed LuShuYangMing closed 2 years ago

LuShuYangMing commented 2 years ago

Hi Gregory: I have a small question, where can we get the information of cell from which patient? For example, I processed the file from cellxgene, and get the cell ID like this "AAACCTGAGGTGTGGT-1" "AAACCTGCACGCCAGT-1" "AAACCTGCAGTCGATT-1". Although the information of patients was provided in the supplementary table 1, we can not find the AAACCTGCACGCCAGT-1 from which patient. Besides, we also downloaded the h5 files from NCBI, unfortunately, we still can not find this relationship. So would you like to help us to get CellID-to-Patient relationship table?

Thank you very much!

GregorySchwartz commented 2 years ago

Should be solved in https://github.com/GregorySchwartz/multiomics-single-cell-t1d/pull/11.