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GregorySchwartz / too-many-cells

Cluster single cells and analyze cell clade relationships with colorful visualizations.
https://gregoryschwartz.github.io/too-many-cells/
GNU General Public License v3.0
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error: "runInteractiveProcess:exec:does not exist" #11

Closed lihpsg closed 4 years ago

lihpsg commented 4 years ago

Encountered the following error when running "make-tree":

"twopi: runInteractiveProcess: runInteractiveProcess: exec: does not exist (No such file or directory)"

The command I used was: ~/.local/bin/too-many-cells make-tree -m ~/too-many-cells/filtered_feature_bc_matrix --draw-collection "PieRing" -- output out >clusters.csv

GregorySchwartz commented 4 years ago

You need to install the graphviz dependency (https://gregoryschwartz.github.io/too-many-cells/#org08d8d97).

GregorySchwartz commented 4 years ago

Please re-open if this answer did not solve your question!

lihpsg commented 4 years ago

Thank! installation of graphviz addressed this issue.