Closed acpandey closed 4 years ago
The csv
parse error means that a csv
was incorrectly parsed. Looking at your command, you specified the --matrix-path
to matrix.mtx
which is a file, not a directory. too-many-cells
assumes a csv
if the argument is a file and a matrix market file directory (which is what you have) if you specify a folder. So just delete the matrix.mtx
and use the folder instead.
The
csv
parse error means that acsv
was incorrectly parsed. Looking at your command, you specified the--matrix-path
tomatrix.mtx
which is a file, not a directory.too-many-cells
assumes acsv
if the argument is a file and a matrix market file directory (which is what you have) if you specify a folder. So just delete thematrix.mtx
and use the folder instead.
thanks. this seems to have worked (ends suddenly while loading matrix). i think my current machine is running out of memory even though i tweaked the settings for docker. will try to see if i can do it on our hpc vs reducing the dataset first.
Great!
i am trying to run too-many-cells on windows 10. I am trying to do it with docker and used a lot of tips from previous issue #9, which was really helpful, but i seem to have hit a different error now. Any help would be greatly appreciated. thanks!