Grenoble-Institute-Neurosciences
commented
1 month ago Hello!
Pixel size is not really an issue. The macro is simply checking in the metadata if the pixel size match the value you set at the part 1 launching. If not it warns you that there is a mismatch and ask you to "force" changing it or let it as it is.
fot the Unrecognized command: "BinaryConditionalDilate " I think you didn't install the plugin needed to run the macro.
Please read carefully the README file ( https://github.com/Grenoble-Institute-Neurosciences/AutoNeuriteJ/blob/master/README.md )
Cheers, Benoit
Hello! Thank you very much for this macro I have been looking for an automated axon tracer so I am testing this program out. I want to use it with my data, but first, I am trying it with the Demo images. I've been running into a few issues while testing the images. Firstly for the demo images when I run Part 1 I get the message: Original pixel size do not match with metadata value. Please reset original pixel size in properties.
What do I need to change to fix the pixel size? I tried to just leave the pixel size as is and continue on to Part 2 but then it gave me this error: Error: Unrecognized command: "BinaryConditionalDilate " in line 370: run ( "BinaryConditionalDilate " , "mask=Binneurons seed=Nuclei iterations=10 create white" <)> ;
What should I do to resolve this? Thank you!