search

Grice-Lab / HmmUFOtu

An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
GNU General Public License v3.0
10 stars 9 forks source link

Can HmmUFOtu be used on non bacterial taxa? #3

Closed jshleap closed 5 years ago

jshleap commented 5 years ago

Hello! I would like to test your implementation on a wider range of taxa beyond bacterial and with different markers. Can HmmUFOtu handle this assuming I construct the trees with BL optimized?

Best,

Sergio #

e00011027 commented 5 years ago

Hi Sergio,

Theoretically yes. The only limitation now is the consensus length cannot greater than 65535 (short int). Please let me know your results.

Best Qi

On Thu, Mar 28, 2019 at 2:32 PM Jose Sergio Hleap notifications@github.com wrote:

Hello! I would like to test your implementation on a wider range of taxa beyond bacterial and with different markers. Can HmmUFOtu handle this assuming I construct the trees with BL optimized?

Best,

Sergio #

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Grice-Lab/HmmUFOtu/issues/3, or mute the thread https://github.com/notifications/unsubscribe-auth/AG-eccid8H2xYhlj1nAQO1nqZCpFPGS9ks5vbQrMgaJpZM4cQ2UK .