search

Griffan / VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
http://griffan.github.io/VerifyBamID/
94 stars 15 forks source link

Resource files for b38 exome #35

Closed dtaliun closed 2 years ago

dtaliun commented 2 years ago

Exome resource files for b38 1000g.phase3.10k.b38.exome.vcf.gz.dat.bed and 1000g.phase3.10k.b38.exome.vcf.gz.dat.mu need "chr" prefix. Without it, samtools gives errors e.g.: [Warning::SimplePileup] initialization fail to parse region '8:120203752-120203752' ..

Griffan commented 2 years ago

Thanks, fixed.

Bioinf-usr commented 9 months ago

Hi,

FYI, these files need to be updated also in the conda version. Because they are still missing the "chr" prefix and therefore leading to the error mentioned in this issue.

Hope you get a chance to fix them for the future users.

Thank you.

Griffan commented 9 months ago

Hi,

FYI, these files need to be updated also in the conda version. Because they are still missing the "chr" prefix and therefore leading to the error mentioned in this issue.

Hope you get a chance to fix them for the future users.

Thank you.

@Bioinf-usr Thanks for your feedback! I will try to release a new tar ball once the recent PRs got merged.