search

Griffan / VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
http://griffan.github.io/VerifyBamID/
94 stars 15 forks source link

Resource files for mouse data #41

Closed xie186 closed 6 months ago

xie186 commented 2 years ago

Hi, thank you for developing the tool. Could you please let me know whether you have tried this tool on mouse data? Which vcf file do you recommend to build the resource file? Thanks again!

Griffan commented 2 years ago

Hi, @xie186 If your specific mouse genome is diploid, in principle this tool can be applied to your files. However, the resource files require a diverse population level genotype VCF as a reference panel. If you don't have this population level genotype VCF. You can still try to use VB1 to test on your dataset .