Insufficient Available markers, check input bam depth distribution in output pileup file after specifying --OutputPileup

Griffan / VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

http://griffan.github.io/VerifyBamID/

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Insufficient Available markers, check input bam depth distribution in output pileup file after specifying --OutputPileup #53

Closed cangyilin closed 1 year ago

cangyilin commented 1 year ago

I want to obtain the result file of .selfSM, but the software gives a warning - "Insufficient Available markers, check input bam depth distribution in output pileup file after specifying --OutputPileup". What could be the reason for this?

Griffan commented 1 year ago

This means your bam file has limited coverage on these predefined SNP markers.