Update usage information - Githubissues

GroundB / RepeatDefeaters

MIT License

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Update usage information #3

Closed mahesh-panchal closed 2 years ago

mahesh-panchal commented 2 years ago

Changes:

Remove workflow execution report from custom config ( this exists already as a profile )
Remove clusterOptions parameter. It's better to directly override it.
Add how to load Nextflow on Uppmax.
Correct instructions for overriding parameters to tools.
Remove $baseDir from params.yml.
Move PFAM_TRANSPOSIBLE_ELEMENT_SEARCH skipping to custom config to allow $projectDir usage.

@mmontonerin Could you check if this solves some of the issues you had?