GuangyuWangLab2021 / cellDancer

Predict RNA velocity through deep learning
https://guangyuwanglab2021.github.io/cellDancer_website/
BSD 3-Clause "New" or "Revised" License
60 stars 11 forks source link

package conflicts #10

Open daniel-spies opened 1 year ago

daniel-spies commented 1 year ago

Hi there, thanks for the nice tool!

in a new conda environment everything ran quite smooth and fast, though when coming to the point to also perform the downstream analysis with Dynamo I'd have to create yet another environment just because all your requirements are set for a specific version. Is this necessary or e.g. would pandas 1.3.5 also work which is required for the dynamo-relase version?

I understand that you supplied the exact version that ensure proper functionality of your software, though is limiting everything else.

so this is rather a feedback / feature request to be more lax on the versions

pipedeptree lists e.g. the following pandas requirements of cellDancer:

├── pandas [required: >=0.24.1, installed: 1.3.4] ├── pandas [required: >=1.1, installed: 1.3.4] │ ├── pandas [required: >=1.1.1, installed: 1.3.4] ├── pandas [required: >=0.23,!=1.4.0, installed: 1.3.4] │ │ ├── pandas [required: >=1.1.1, installed: 1.3.4] │ ├── pandas [required: >=1.0, installed: 1.3.4] │ │ ├── pandas [required: >=0.23, installed: 1.3.4] │ │ ├── pandas [required: >=0.25, installed: 1.3.4]

cheers Daniel

Abclisy commented 1 year ago

Thank you for the suggestion! We will improve this in the next version. We will publish a list of fixed dependencies versions that will let both Dynamo and cellDancer runnable.

Best, Shengyu