webiste and cdplt.scatter_gene problems

Dear CellDancer team, First, The website of CellDancer (https://guangyuwanglab2021.github.io/cellDancer_website/index.html#) couldn't display completely when I logged on, so I asked the IT staff that there was a problem with the website. Can you solve it?

Second, following the instructions I ran into an error when I want to visual the gene velocity : gene_list=['GATA1','KLF1','EKLF','CEBPB','ID3','EBF1','RUNX2']

ncols=5

height=math.ceil(len(gene_list)/5)*4

fig = plt.figure(figsize=(20,height))

for i in range(len(gene_list)): ax = fig.add_subplot(math.ceil(len(gene_list)/ncols), ncols, i+1) cdplt.scatter_gene( ax=ax,x='splice',y='unsplice', cellDancer_df=cellDancer_df, custom_xlim=None, custom_ylim=None, colors=colormap.colormap_erythroid, alpha=0.5, s = 5, velocity=True, gene=gene_list[i]) ax.set_title(gene_list[i]) ax.axis('off') plt.show() And I encountered: Traceback (most recent call last): File "", line 12, in File " /miniconda3/envs/cellDancer/lib/python3.7/site-packages/celldancer/plotting/gene.py", line 126, in scatter_gene edgecolor="none") File "/miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/init.py", line 1414, in inner return func(ax, *map(sanitize_sequence, args), **kwargs) File " /miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 4388, in scatter get_next_color_func=self._get_patches_for_fill.get_next_color) File " /miniconda3/envs/cellDancer/lib/python3.7/site-packages/matplotlib/axes/_axes.py", line 4226, in _parse_scatter_color_args raise invalid_shape_exception(c.size, xsize) from err ValueError: 'c' argument has 4895 elements, which is inconsistent with 'x' and 'y' with size 0.

GuangyuWangLab2021 / cellDancer

webiste and cdplt.scatter_gene problems #17