Open mabaoweireadingene opened 7 months ago
Hello,
Thank you for reaching out. The preprocessing example allows you to obtain the top 2000 genes. You can also specify your top n genes.
For finding genes of interest, this issue might be helpful.
Best, Shengyu
Hi Doc ex: gene_list=['Smarca2', 'Rbms2', 'Myo1b', 'Hba-x', 'Yipf5', 'Skap1', 'Smim1', 'Nfkb1', 'Sulf2', 'Blvrb', 'Hbb-y', 'Coro2b', 'Yipf5', 'Phc2', 'Mllt3']
loss_df, cellDancer_df=cd.velocity(cell_type_u_s,\ gene_list=gene_list,\ permutation_ratio=0.125,\ n_jobs=8)
I don't know how to selsect gene_list for my analysis, could you give some advises? Thanks