Do we have a function to compute RNA velocity for cell by gene matrix?

GuangyuWangLab2021 / cellDancer

Predict RNA velocity through deep learning

https://guangyuwanglab2021.github.io/cellDancer_website/

BSD 3-Clause "New" or "Revised" License

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Do we have a function to compute RNA velocity for cell by gene matrix? #26

Open HelloWorldLTY opened 8 months ago

HelloWorldLTY commented 8 months ago

Hi, I wonder if there is any function in celldancer which can generate the raw RNA velocity matrix. I intend to compare this method with other RNA velocity estimation method. Thanks a lot.

Abclisy commented 6 months ago

Hello,

Thank you for reaching out. The to_dynamo function might be helpful for you to transfer the dataframe to data. Then you can extract the velocity matrix from the adata.

Best, Shengyu