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GuckLab / impose

Align microscopy images using custom-defined structural patterns and superimpose those on data from other imaging modalities.
GNU General Public License v3.0
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Allow to load acquisition data files from BrillouinAcquisition #19

Open raimund-schluessler opened 3 years ago

raimund-schluessler commented 3 years ago

Acquisition data files from BrillouinAcquisition contain Fluorescence and Brightfield images which could be loaded directly into impose.

paulmueller commented 3 years ago

Do you have an example file and is there code in bmlab that I can build on for this?

raimund-schluessler commented 3 years ago

Do you have an example file and is there code in bmlab that I can build on for this?

The file is created by BrillouinAcquisition, not bmlab in that case. It's the raw data coming from the brightfield/fluorescence camera. The images are written here: https://github.com/BrillouinMicroscopy/h5bm/blob/cpp/h5bm.h#L384-L452 (this code is quite old and needs a rewrite, sorry).

I will upload an example file for you to look at.

paulmueller commented 2 years ago

Could you please attach such a file (zipped) to this issue?