search

GuckLab / impose

Align microscopy images using custom-defined structural patterns and superimpose those on data from other imaging modalities.
GNU General Public License v3.0
1 stars 0 forks source link

Unable to open files evaluated in BMicro 0.6.1 #53

Closed Mahajan30 closed 2 years ago

Mahajan30 commented 2 years ago

I am unable to open the Brillouin data evaluated by BMicro 0.6.1 in Impose. This is the error message I get:

Unhandled exception in Impose version 0.3.1: Traceback (most recent call last): File "/Volumes/Impose_0.3.1/Impose.app/Contents/MacOS/impose/gui/collect.py", line 149, in on_add_data self.add_paths(paths) File "/Volumes/Impose_0.3.1/Impose.app/Contents/MacOS/impose/gui/collect.py", line 87, in add_paths self.session_scheme.append(pp) File "impose/session.py", line 74, in append data_source = DataSource(path) File "impose/data.py", line 44, in init self._initialize_from_path(path) File "impose/data.py", line 95, in _initialize_from_path data_channels, meta_orig = load(path) File "impose/formats/init.py", line 45, in load channels, meta = suffix_dictpath.suffix File "impose/formats/fmt_bm_bmlab.py", line 39, in load_h5 evc.get_data(key) File "bmlab/controllers.py", line 786, in get_data KeyError: 'brillouin_shift'

raimund-schluessler commented 2 years ago

Yes, impose needs an update to bmlab 0.6.1.