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GuillaumeMougeot / biom3d

Easy Volumetric Segmentation with Deep Learning
https://biom3d.readthedocs.io/en/latest/index.html
GNU General Public License v3.0
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error when trying pip install biom3d[gui] #7

Closed pawlowska closed 1 week ago

pawlowska commented 1 week ago

I am able to install biom3d with pip, but I get an error for biom3d[gui]. I'm using Windows 10.

Here is the terminal output:

Logger.cpp src/ice/cpp/include\IceUtil/Timer.h(105): error C2039: 'binary_function': is not a member of 'std' C:\Program Files (x86)\Microsoft Visual Studio\2022\BuildTools\VC\Tools\MSVC\14.37.32822\include\set(23): note: see declaration of 'std' src/ice/cpp/include\IceUtil/Timer.h(105): error C2504: 'binary_function': base class undefined src/ice/cpp/include\IceUtil/Timer.h(105): error C2143: syntax error: missing ',' before '<' error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio\\2022\\BuildTools\\VC\\Tools\\MSVC\\14.37.32822\\bin\\HostX86\\x64\\cl.exe' failed with exit code 2 [end of output]

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for zeroc-ice Running setup.py clean for zeroc-ice Failed to build zeroc-ice ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (zeroc-ice)

GuillaumeMougeot commented 1 week ago

hi, the installation of pip install biom3d[gui] is only necessary if you intend to use OMERO. Otherwise you do not need it to start the GUI. if you do need OMERO, please refer to the documentation here: https://biom3d.readthedocs.io/en/latest/installation.html#python-virtual-environment and this quote:

Warning: For Windows users: you might need to install Visual Studio C++ 14.0 to install zeroc dependency. If it does not work, please refers to the Anaconda installation.

pawlowska commented 1 week ago

This was not clear to me. Indeed I am able to start the GUI, so I'm happy. (I do not currently use Omero, but I do have Visual Studio installed, as you can see from the error, it manages to compile some files and only crashes on the Logger.cpp)

GuillaumeMougeot commented 1 week ago

great, the error with visual studio might be related to VS installed library and might need more information to solve. a workaround is to use Anaconda instead... but it might not be need. i will close the issue, feel free to reopen one if needed