adonis2() instead of adonis(), could you please update?

[marwa38]

Hi

Could you please as there is no possiblity to use adonis() again? Should be updated to adonis2().

dist.bray.intes.log <- phyloseq::distance(ps.prev.intes.log, method = "bray")
dist.bray.intes.log.adonis <- adonis.pair(dist.bray.intes.log, meta.ps.prev.intes.log$Regime)
# Error: 'adonis' is defunct. Use 'adonis2' instead. See help("Defunct") and help("vegan-defunct").
dist.bray.intes.log.adonis

For info, I have v0.1 of your great package.

Thanks in advance Marwa

[marwa38]

> dist_metabolites_pair_BiologicalSex <- adonis.pair(dist_metabolites, metadata$BiologicalSex)
Warning message:
In adonis(as.dist(as.matrix(dist.mat)[Factor == comb.fact[1, i] |  :
  'adonis' is deprecated.
Use 'adonis2' instead.
See help("Deprecated") and help("vegan-deprecated").