Open batelz opened 1 month ago
Hi @batelz,
Thank you for reporting the issue. Could you check:
the versions of the uploaded libraries in conda
which version of READ you have clonned from Github
So I can try to replicate the issue myself.
Hi, and thank you for the fast reply @SonofLastPanda
I was not using conda for the libraries, but pip:
(READ_V2) :~$ pip show pandas numpy pip matplotlib plinkio
Name: pandas
Version: 1.3.5
---
Name: numpy
Version: 1.21.6
---
Name: pip
Version: 24.0
---
Name: matplotlib
Version: 3.5.3
---
Name: plinkio
Version: 0.9.8
I've cloned the READv2 yesterday, so it's the most up to date version, I guess...
Thank you for the extra information @batelz!
Interestingly, I could run the script with those versions as well. I guess that there is something going on with the dependencies. I would suggest setting up the conda environment so the dependencies are managed better.
Hi, When running the example you provided:
python READ2.py -i Srubnaya.subset_bed
I get an error:
What could be the issue?
Thank you,