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GutenkunstLab / SloppyCell

BSD 3-Clause "New" or "Revised" License
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update to python 3 #4

Closed bcdaniels closed 2 years ago

bcdaniels commented 2 years ago

Hi,

We've managed to get SloppyCell (mostly) running in python 3, thanks to efforts of the @DigInG group here—specifically @sudheerad9 and @tjquinn1!

This is still a bit rough around the edges, so you may want to continue editing this branch before merging. In particular, the SBML interface isn't working (maybe there were some changes to libsmbl at some point?), and neither is stochastic integration (which we don't use and wasn't immediately obvious how to fix). Also, at least on my machine, compiler optimization messages are annoyingly showing up a lot on the command line. But otherwise we are glad to say that things seem to be working—I believe this also addresses issue #2.

RyanGutenkunst commented 2 years ago

Wow... This is an impressive amount of work. To my knowledge, your group is the only one actively using SloppyCell at the moment. So if this is working for you, I'm happy to merge it back in. Cheers!