search

GuyAllard / markov_clustering

markov clustering in python
MIT License
167 stars 37 forks source link

AttributeError: module 'markov_clustering' has no attribute 'draw_graph' #13

Closed kzorina closed 5 years ago

kzorina commented 5 years ago

When I run this piece of code:

result = mc.run_mcl(graph_matrix_sparse, inflation=1.4)
clusters = mc.get_clusters(result)
mc.draw_graph(matrix, clusters, pos=positions, node_size=50, with_labels=False, edge_color="silver")

I get message 

----> 8 mc.draw_graph(matrix, clusters, pos=positions, node_size=50, with_labels=False, edge_color="silver")

AttributeError: module 'markov_clustering' has no attribute 'draw_graph'

markov-clustering-0.0.6.dev0 ( tried markov-clustering-0.0.5.dev0 too) python==3.6

GuyAllard commented 5 years ago

Hi, Did you install with visualization support using pip install markov_clustering[drawing] ?

The visualization is an optional utility as it does not form part of the core algorithm.

kzorina commented 5 years ago

@GuyAllard Thank you! I missed this step. Now graph is fine.