HBAP-Dataminds / COVID-19

Central location for all things related to COVID-19 including Kaggle competitions and other work
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Integrate DrugBank data #2

Open seangrant82 opened 4 years ago

seangrant82 commented 4 years ago

We need to integrate the DrugBank data into the KG. The source XML is loaded in the Dataminds Google drive and we can use this to understand the schema: https://docs.drugbankplus.com/xml/#introduction

Here is a link to Remdesvir showcasing the information we need: https://www.drugbank.ca/drugs/DB14761#BE0003801

We need to try and extract the following information:

meghazavar commented 4 years ago

@seangrant82 - thank you for starting issues for collaboration. I uploaded my notebook which converts XML to CSV but noticed that data may already be available in CSV and relational format. quick question - how did you find the link to download the XML, I am not seeing any.