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HCBravoLab
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metagenomeFeatures
R package for annotating metagenomic datasets with taxonomic information
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Failing on Bioconductor builders
#52
lshep
opened
3 years ago
1
fix dbplyr classname change
#51
nate-d-olson
closed
5 years ago
0
Check failure with dev version of dbplyr
#50
hadley
opened
5 years ago
0
Vignette revision
#49
nate-d-olson
closed
6 years ago
0
Bioc check
#48
nate-d-olson
closed
6 years ago
1
use sqlite to add columns instead of decipher add2db
#47
nate-d-olson
closed
6 years ago
0
build SILVA annotation package
#46
nate-d-olson
opened
6 years ago
0
add documentation for check warnings
#45
nate-d-olson
opened
6 years ago
0
make new MgDb vignette
#44
nate-d-olson
closed
6 years ago
0
revise make_mgdb_sqlite
#43
nate-d-olson
closed
6 years ago
0
annotation packages .unLoad function
#42
nate-d-olson
opened
6 years ago
0
add db connection checks
#41
nate-d-olson
opened
6 years ago
0
Aggregation of taxonomy to specified levels
#40
jmwagner
opened
6 years ago
0
Vignettes
#39
nate-d-olson
closed
6 years ago
0
close open sql connection, filtering seq on the database instead of i…
#38
nate-d-olson
closed
6 years ago
1
revised MgDb select method combining seq and taxa SQLite query
#37
nate-d-olson
closed
6 years ago
0
Make the seq slot optional for mgFeatures
#36
jnpaulson
closed
6 years ago
0
Should the seq slot be optional for mgFeatures?
#35
nate-d-olson
closed
6 years ago
1
fixing vector query
#34
nate-d-olson
closed
6 years ago
0
RNACentral ID mapping
#33
nate-d-olson
closed
6 years ago
1
mgdb_select warning when no entries match query
#32
nate-d-olson
closed
6 years ago
1
mgdb_select only add greengenes prefix to query when not present
#31
nate-d-olson
opened
6 years ago
0
Should mgDb_select have an option to return an mgFeatures object?
#30
nate-d-olson
opened
6 years ago
0
Annotate features
#29
nate-d-olson
closed
6 years ago
1
disconnect from db when done working with for MgDb class objects
#28
nate-d-olson
closed
6 years ago
0
Mg features data frame
#27
nate-d-olson
closed
6 years ago
0
add tests for newMgDb and make_mgdb_sqlite
#26
nate-d-olson
opened
6 years ago
0
define mgFeatures initialize function
#25
nate-d-olson
opened
6 years ago
0
mgF subsets tests and method definition
#24
nate-d-olson
closed
6 years ago
1
add subsetting methods for mgFeatures
#23
nate-d-olson
closed
6 years ago
0
mgdb_select subsetting seq results in large biostrings object
#22
nate-d-olson
closed
6 years ago
1
annotateFeatures for mgFeatures object
#21
daniel01001000
closed
8 years ago
1
extraction of functions from mgDb-class
#20
daniel01001000
closed
8 years ago
4
Devel
#19
nate-d-olson
closed
8 years ago
0
new aggregate_taxa function
#18
nate-d-olson
closed
8 years ago
0
Phylo slots
#17
nate-d-olson
closed
8 years ago
0
Mr anno
#16
nate-d-olson
closed
8 years ago
0
Mr anno
#15
nate-d-olson
closed
8 years ago
0
Bioc submission
#14
nate-d-olson
closed
9 years ago
0
Travis setup
#13
nate-d-olson
closed
9 years ago
0
Vignette revisions
#12
nate-d-olson
closed
9 years ago
0
Travis setup
#11
nate-d-olson
closed
9 years ago
1
MgAnnotation v2
#10
nate-d-olson
closed
9 years ago
0
Annotate method v2
#9
nate-d-olson
closed
9 years ago
0
Adding test
#8
nate-d-olson
closed
9 years ago
1
correcting authorship
#7
jnpaulson
closed
9 years ago
0
Adding test
#6
nate-d-olson
closed
9 years ago
1
Adding test
#5
nate-d-olson
closed
9 years ago
1
Method accessors
#4
nate-d-olson
closed
9 years ago
0
added validity check for named DNAStringSets
#3
jnpaulson
closed
9 years ago
1
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