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HCBravoLab / metagenomeSeq

Statistical analysis for sparse high-throughput sequencing
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continuous variable test #81

Open Ivy-ops opened 3 years ago

Ivy-ops commented 3 years ago

Hi,

Does fitFeatureModel() supports testing the association of continuous covariate with features? I tried the same way as binary analysis with code fitFeatureModel(mgs,mod), error caused: Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : var is empty Thanks!

hcorrada commented 3 years ago

It does not. It currently only supports testing for two groups. On Jan 12, 2021, 4:02 PM -0800, Ivy-ops notifications@github.com, wrote:

Hi, Does fitFeatureModel() supports testing the association of continuous covariate with features? I tried the same way as binary analysis with code fitFeatureModel(mgs,mod), error caused: Error in limma::squeezeVar(fit[-exclude, "s2"], fit[-exclude, "df"]) : var is empty Thanks! — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub, or unsubscribe.