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HCBravoLab
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metagenomeSeq
Statistical analysis for sparse high-throughput sequencing
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Vignette
#42
jnpaulson
closed
7 years ago
0
forcing min p-val in case of NA vals
#41
jnpaulson
closed
7 years ago
0
Deprecate
#40
jnpaulson
closed
7 years ago
0
tweak table functions (removed invisible call)
#39
jnpaulson
closed
7 years ago
0
new function to make it easier to rename samples
#38
nate-d-olson
opened
8 years ago
0
MRcount scaling without normalization
#37
nate-d-olson
opened
8 years ago
0
metagenomeSeq for continuous phenotype
#36
pgallins
opened
8 years ago
0
Error messages when normalizing with DESeq2 and CSS
#35
kathfi
closed
8 years ago
1
Problem with MRcoefs
#34
willowsblade
closed
8 years ago
2
revised norm and log argument definitions
#33
nate-d-olson
closed
8 years ago
0
matrixStats::rowMedians() instead of Biobase::rowMedians()
#32
HenrikBengtsson
closed
8 years ago
1
What is logFC reporting in MRcoefs output?
#31
CarlyMuletzWolz
closed
8 years ago
13
Stop if all variables undefined in fitTimeSeries
#30
jnpaulson
closed
8 years ago
1
Error with NAN
#29
jnpaulson
opened
8 years ago
0
Add offset normalized feature
#28
jnpaulson
opened
8 years ago
0
Upgrade to biomformat
#27
jnpaulson
closed
8 years ago
1
How to read biom v2 format into metagenomeSeq?
#26
lfaller
closed
8 years ago
2
Upgrading time
#25
jnpaulson
closed
8 years ago
0
Upgrading time
#24
jnpaulson
closed
8 years ago
0
CSS convert warning to message
#23
jnpaulson
closed
9 years ago
0
biom2MRexperiment error
#22
ETaSky
closed
9 years ago
6
normFactors following aggTax/aggregateByTaxonomy
#21
jnpaulson
opened
9 years ago
2
cleanup ret =TRUE options
#20
jnpaulson
closed
9 years ago
1
aggTax
#19
jnpaulson
closed
9 years ago
0
aggTax
#18
jnpaulson
closed
9 years ago
0
Merge low abundance OTUs in an "Others" category
#17
ericjcgalvez
closed
9 years ago
1
cumNormStatFast returning default value
#16
CarlyMuletzWolz
closed
9 years ago
16
plotPCA
#15
jnpaulson
opened
9 years ago
0
Problem using display function / publishing of results
#14
kthlnktng
closed
9 years ago
6
Load_biom returns JSON error
#13
kthlnktng
closed
9 years ago
2
Request 7.28.14
#12
jnpaulson
closed
10 years ago
0
Timeseries
#11
jnpaulson
closed
10 years ago
0
load_biom taxonomy strings
#10
askerdb
closed
10 years ago
1
Load_biom returns error
#9
CarlyMuletzWolz
closed
10 years ago
7
plotOrd function - axis label not meaningful
#8
jnpaulson
closed
10 years ago
1
MRtable, etc will report NA rows when user requests more features than available
#7
jnpaulson
closed
8 years ago
0
Setting NA to features when a group is completely absent of a feature
#6
jnpaulson
closed
8 years ago
2
Testing for appropriateness of ZIG
#5
jnpaulson
opened
10 years ago
0
aggregateByTaxonomy requires MRexperiment object
#4
jnpaulson
closed
10 years ago
1
Loading a BIOM file with bootstrap information does not work
#3
mdehollander
closed
10 years ago
3
Output multiple taxonomic rank columns using MRcoefs
#2
kfontanez
closed
10 years ago
1
Creating metadata annotated data frames
#1
kfontanez
closed
10 years ago
2
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