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HCGB-IGTP / BacterialTyper

Bacterial identification pipeline
https://hcgb-igtp.github.io/BacterialTyper/
MIT License
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Unable to run due to ModuleNotFoundError: No module named' importlib. metadata ' #26

Open Rhein-momo opened 1 year ago

Rhein-momo commented 1 year ago

Traceback (most recent call last): File "/home/momo/mambaforge/envs/BacterialTyper_mamba/bin/BacterialTyper", line 12, in import BacterialTyper.modules File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/init.py", line 22, in from BacterialTyper import File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/modules/init.py", line 25, in from BacterialTyper.modules import File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/modules/annot.py", line 20, in from BacterialTyper.config import set_config File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/config/init.py", line 7, in from BacterialTyper.config import File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/config/extern_progs.py", line 29, in from BacterialTyper.scripts import functions File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/scripts/init.py", line 27, in from BacterialTyper.scripts import File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/scripts/database_generator.py", line 33, in from BacterialTyper.scripts import min_hash_caller File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/BacterialTyper/scripts/min_hash_caller.py", line 33, in import sourmash File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/sourmash/init.py", line 113, in from . import lca File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/sourmash/lca/init.py", line 8, in from .command_index import index File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/sourmash/lca/command_index.py", line 9, in from sourmash import sourmash_args File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/sourmash/sourmash_args.py", line 46, in import screed File "/home/momo/mambaforge/envs/BacterialTyper_mamba/lib/python3.7/site-packages/screed/init.py", line 39, in from importlib.metadata import version, PackageNotFoundError ModuleNotFoundError: No module named 'importlib.metadata'

Rhein-momo commented 1 year ago

I reinstalled importlib-metadata=4.5.0, but the issue hasn't been resolved