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HCGB-IGTP / XICRA

Small RNAseq pipeline for paired-end reads
MIT License
7 stars 3 forks source link

Miraligner not working #35

Closed Ben7124 closed 2 years ago

Ben7124 commented 2 years ago

Hello, I ran the command: XICRA miRNA --input latest --software miraligner optimir sRNAbench, but I don't get any output due to the following error: Thanks for any help!

Exception in thread "main" java.io.FileNotFoundException: /home/ubu/miniconda3/envs/XICRA/lib/python3.6/site-pack ages/XICRA/modules/db_files/hairpin.fa (No such file or directory) at java.io.FileInputStream.open0(Native Method) at java.io.FileInputStream.open(FileInputStream.java:195) at java.io.FileInputStream.(FileInputStream.java:138) at java.io.FileInputStream.(FileInputStream.java:93) at java.io.FileReader.(FileReader.java:58) at miraligner.tools.checksp(tools.java:59) at miraligner.Main.main(Main.java:72)