h5tojson fails with SNDR data file

HDFGroup / hdf5-json

Specification and tools for representing HDF5 in JSON

https://hdf5-json.readthedocs.io

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Closed jreadey closed 2 years ago

jreadey commented 8 years ago

Running h5tojson.py fails with "Segmentation Fault" with the file: SNDR.SNPP.ATMS.20150515T0012.m06.g003.L1B_sample.v00_00_01.T.150901132017.nc.

File is available here: s3://hdfgroup/data/hdf5test/SNDR.SNPP.ATMS.20150515T0012.m06.g003.L1B_sample.v00_00_01.T.150901132017.nc.

jreadey commented 8 years ago

The problem seems to be with h5py. The following program causes the same segmentation fault:

f = h5py.File('SNDR....17.nc', 'r')
dset = f['chan_band']
print(dset.fillvalue)

ajelenak commented 2 years ago

Closing this issue since the file works for the current h5py master branch and hdf5-json master branch.

The fix for the problem was a very recent PR for h5py so still no official release.