Closed psavery closed 4 years ago
psavery
commented
4 years ago The crash appears to be caused by libopenblas==0.3.9. libopenblas==0.3.7 seems to work, though.
I am not completely sure why 0.3.9 was being installed. It seems that numpy installs 0.3.7 by default.
joelvbernier
commented
4 years ago Me neither, but 0.3.7 seems to be working on Mac without issues. I installed the specific version in the env with conda; should we add this to build req's or just make a note for those who chose to build from source?
psavery
commented
4 years ago It looks like @cjh1 changed the conda recipe in #303 (not yet merged) to use 0.3.7. Maybe that will be enough?
joelvbernier
commented
4 years ago Should we pin this in the install req's in setup.py for pip install as well?
psavery
commented
4 years ago It looks like on Linux and Mac (and possibly Windows), the numpy on PyPI comes with libopenblas embedded inside of it, rather than it being installed separately. So we can't control the version. However, it is currently using 0.3.7, so that is good. We might be able to close this issue.
By the way, as a side note, if you install numpy from the default channel (the anaconda channel), it comes with mkl, not openblas. But if you install numpy from the conda-forge channel, it comes with openblas.
joelvbernier
commented
4 years ago Crashes every time I manipulate anything in polar view. Note that libopenblas is 0.3.7.
Process: python3.8 [29311]
Path: /Users/USER/*/python
Identifier: python3.8
Version: 0
Code Type: X86-64 (Native)
Parent Process: bash [29098]
Responsible: python3.8 [29311]
User ID: 58388
Date/Time: 2020-04-13 13:28:00.727 -0700
OS Version: Mac OS X 10.14.6 (18G3020)
Report Version: 12
Bridge OS Version: 3.0 (14Y906)
Anonymous UUID: 5775D611-14BB-40D5-AE31-FE346ED6B25B
Sleep/Wake UUID: 7D8566DC-C165-457F-951D-7C6655C26EFF
Time Awake Since Boot: 700000 seconds
Time Since Wake: 480 seconds
System Integrity Protection: enabled
Crashed Thread: 10 Thread (pooled)
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000070000a2019a8
Exception Note: EXC_CORPSE_NOTIFY
Termination Signal: Segmentation fault: 11
Termination Reason: Namespace SIGNAL, Code 0xb
Terminating Process: exc handler [29311]
VM Regions Near 0x70000a2019a8:
Stack 000070000a081000-000070000a103000 [ 520K] rw-/rwx SM=COW thread 8
-->
Stack Guard 000070000a209000-000070000a20a000 [ 4K] ---/rwx SM=NUL
Thread 0:: Dispatch queue: com.apple.main-thread
0 com.apple.CoreGraphics 0x00007fff468e37df argb32_image_mark_argb32 + 693
1 com.apple.CoreGraphics 0x00007fff468e3494 argb32_image_mark_image + 1025
2 com.apple.CoreGraphics 0x00007fff4688e6c1 argb32_image + 3321
3 com.apple.CoreGraphics 0x00007fff4688d9bf ripl_Mark + 22
4 com.apple.CoreGraphics 0x00007fff4688d994 RIPLayerBltImage + 1018
5 com.apple.CoreGraphics 0x00007fff4688d2d6 ripc_RenderImage + 228
6 com.apple.CoreGraphics 0x00007fff46880f51 ripc_DrawImage + 812
7 com.apple.CoreGraphics 0x00007fff46880c16 CGContextDelegateDrawImage + 41
8 com.apple.CoreGraphics 0x00007fff468803f4 CGContextDrawImageWithOptions + 432
9 com.apple.CoreGraphics 0x00007fff4688022f CGContextDrawImage + 51
10 com.apple.QuartzCore 0x00007fff50f22a87 -[CALayer _renderForegroundInContext:] + 4459
11 com.apple.AppKit 0x00007fff43d3566d -[_NSViewBackingLayer _renderForegroundInContext:] + 155
12 com.apple.QuartzCore 0x00007fff50f20eee -[CALayer renderInContext:] + 1670
13 com.apple.QuartzCore 0x00007fff50f23211 -[CALayer _renderSublayersInContext:] + 536
14 com.apple.QuartzCore 0x00007fff50f20efd -[CALayer renderInContext:] + 1685
15 com.apple.AppKit 0x00007fff43d35469 -[NSView(NSInternal) _renderLayerInContext:] + 133
16 com.apple.AppKit 0x00007fff43b5c90f -[NSView(NSInternal) _recursive:displayRectIgnoringOpacity:inContext:shouldChangeFontReferenceColor:stopAtLayerBackedViews:] + 1214
17 com.apple.AppKit 0x00007fff43d34ecb -[NSView displayRectIgnoringOpacity:inContext:] + 902
18 libqmacstyle.dylib 0x000000013678d353 invocation function for block in QMacStyle::drawPrimitive(QStyle::PrimitiveElement, QStyleOption const*, QPainter*, QWidget const*) const + 1187
19 libqmacstyle.dylib 0x000000013678803b QMacStylePrivate::drawNSViewInRect(NSView*, QRectF const&, QPainter*, void (CGContext*, CGRect const&) block_pointer) const + 267
20 libqmacstyle.dylib 0x000000013678a998 QMacStyle::drawPrimitive(QStyle::PrimitiveElement, QStyleOption const*, QPainter*, QWidget const*) const + 1992
21 QtWidgets 0x000000011cd12ecd QTabWidget::paintEvent(QPaintEvent*) + 557
22 QtWidgets.abi3.so 0x000000011c56f5aa QTabWidgetWrapper::paintEvent(QPaintEvent*) + 234
23 QtWidgets 0x000000011cb7e288 QWidget::event(QEvent*) + 1096
24 QtWidgets.abi3.so 0x000000011c56c9c9 QTabWidgetWrapper::event(QEvent*) + 281
25 QtWidgets 0x000000011cb435ba QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
26 QtWidgets 0x000000011cb44a46 QApplication::notify(QObject*, QEvent*) + 598
27 QtWidgets.abi3.so 0x000000011c1c76fd QApplicationWrapper::notify(QObject*, QEvent*) + 317
28 QtCore 0x000000011b4e6ae4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
29 QtWidgets 0x000000011cb6f3ab QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 3467
30 QtWidgets 0x000000011cb78200 QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 1120
31 QtWidgets 0x000000011cb6f6c5 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 4261
32 QtWidgets 0x000000011cb78200 QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 1120
33 QtWidgets 0x000000011cb7809d QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 765
34 QtWidgets 0x000000011cb7809d QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 765
35 QtWidgets 0x000000011cb7809d QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 765
36 QtWidgets 0x000000011cb7809d QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 765
37 QtWidgets 0x000000011cb7809d QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 765
38 QtWidgets 0x000000011cb7809d QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 765
39 QtWidgets 0x000000011cb7809d QWidgetPrivate::paintSiblingsRecursive(QPaintDevice*, QList<QObject*> const&, int, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 765
40 QtWidgets 0x000000011cb6f6c5 QWidgetPrivate::drawWidget(QPaintDevice*, QRegion const&, QPoint const&, QFlags<QWidgetPrivate::DrawWidgetFlag>, QPainter*, QWidgetRepaintManager*) + 4261
41 QtWidgets 0x000000011cb510a6 QWidgetRepaintManager::paintAndFlush() + 4966
42 QtWidgets 0x000000011cb51232 QWidgetRepaintManager::sync() + 274
43 QtWidgets 0x000000011cb7e4ad QWidget::event(QEvent*) + 1645
44 QtWidgets 0x000000011cc90835 QMainWindow::event(QEvent*) + 277
45 QtWidgets 0x000000011cb435ba QApplicationPrivate::notify_helper(QObject*, QEvent*) + 266
46 QtWidgets 0x000000011cb44a46 QApplication::notify(QObject*, QEvent*) + 598
47 QtWidgets.abi3.so 0x000000011c1c76fd QApplicationWrapper::notify(QObject*, QEvent*) + 317
48 QtCore 0x000000011b4e6ae4 QCoreApplication::notifyInternal2(QObject*, QEvent*) + 212
49 QtCore 0x000000011b4e7cd9 QCoreApplicationPrivate::sendPostedEvents(QObject*, int, QThreadData*) + 809
50 libqcocoa.dylib 0x0000000134e1e139 QCocoaEventDispatcherPrivate::processPostedEvents() + 313
51 libqcocoa.dylib 0x0000000134e1e8a8 QCocoaEventDispatcherPrivate::postedEventsSourceCallback(void*) + 40
52 com.apple.CoreFoundation 0x00007fff4645ce33 __CFRUNLOOP_IS_CALLING_OUT_TO_A_SOURCE0_PERFORM_FUNCTION__ + 17
53 com.apple.CoreFoundation 0x00007fff4645cdd9 __CFRunLoopDoSource0 + 108
54 com.apple.CoreFoundation 0x00007fff4644079b __CFRunLoopDoSources0 + 195
55 com.apple.CoreFoundation 0x00007fff4643fd65 __CFRunLoopRun + 1189
56 com.apple.CoreFoundation 0x00007fff4643f66e CFRunLoopRunSpecific + 455
57 com.apple.HIToolbox 0x00007fff4569e1ab RunCurrentEventLoopInMode + 292
58 com.apple.HIToolbox 0x00007fff4569dded ReceiveNextEventCommon + 355
59 com.apple.HIToolbox 0x00007fff4569dc76 _BlockUntilNextEventMatchingListInModeWithFilter + 64
60 com.apple.AppKit 0x00007fff43a3577d _DPSNextEvent + 1135
61 com.apple.AppKit 0x00007fff43a3446b -[NSApplication(NSEvent) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 1361
62 com.apple.AppKit 0x00007fff43a2e588 -[NSApplication run] + 699
63 libqcocoa.dylib 0x0000000134e1d623 QCocoaEventDispatcher::processEvents(QFlags<QEventLoop::ProcessEventsFlag>) + 2579
64 QtCore 0x000000011b4e2b6f QEventLoop::exec(QFlags<QEventLoop::ProcessEventsFlag>) + 431
65 QtCore 0x000000011b4e70f2 QCoreApplication::exec() + 130
66 QtWidgets.abi3.so 0x000000011c1c8e21 Sbk_QApplicationFunc_exec_(_object*) + 33
67 python 0x000000010f46c200 cfunction_vectorcall_NOARGS + 96
68 python 0x000000010f561c95 call_function + 165
69 python 0x000000010f55e6c2 _PyEval_EvalFrameDefault + 43506
70 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
71 python 0x000000010f561c95 call_function + 165
72 python 0x000000010f55f9cd _PyEval_EvalFrameDefault + 48381
73 python 0x000000010f5521db _PyEval_EvalCodeWithName + 443
74 python 0x000000010f5cd24e PyRun_FileExFlags + 366
75 python 0x000000010f5cc417 PyRun_SimpleFileExFlags + 391
76 python 0x000000010f5f92ef Py_RunMain + 3535
77 python 0x000000010f5fa739 pymain_main + 1769
78 python 0x000000010f3dc179 main + 57
79 libdyld.dylib 0x00007fff723c73d5 start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff724ff866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff725be56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x000000012383bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 2:
0 libsystem_kernel.dylib 0x00007fff724ff866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff725be56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x000000012383bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 3:
0 libsystem_kernel.dylib 0x00007fff724ff866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff725be56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x000000012383bc3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 4:
0 libsystem_kernel.dylib 0x00007fff724ff866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff725be56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x00000001105e0c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 5:
0 libsystem_kernel.dylib 0x00007fff724ff866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff725be56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x00000001105e0c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 6:
0 libsystem_kernel.dylib 0x00007fff724ff866 __psynch_cvwait + 10
1 libsystem_pthread.dylib 0x00007fff725be56e _pthread_cond_wait + 722
2 libopenblasp-r0.3.7.dylib 0x00000001105e0c3b blas_thread_server + 619
3 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
4 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
5 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 7:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x00007fff724fc21a mach_msg_trap + 10
1 libsystem_kernel.dylib 0x00007fff724fc768 mach_msg + 60
2 com.apple.CoreFoundation 0x00007fff4644099e __CFRunLoopServiceMachPort + 328
3 com.apple.CoreFoundation 0x00007fff4643ff0c __CFRunLoopRun + 1612
4 com.apple.CoreFoundation 0x00007fff4643f66e CFRunLoopRunSpecific + 455
5 com.apple.AppKit 0x00007fff43a3d4a2 _NSEventThread + 175
6 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
7 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
8 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 8:
0 libsystem_pthread.dylib 0x00007fff725ba3f0 start_wqthread + 0
Thread 9:
0 libsystem_pthread.dylib 0x00007fff725ba3f0 start_wqthread + 0
Thread 10 Crashed:: Thread (pooled)
0 libopenblasp-r0.3.7.dylib 0x00000001105e5368 dgetrf_parallel + 24
1 libopenblasp-r0.3.7.dylib 0x00000001102cc5cc dgetrf_ + 284
2 _umath_linalg.cpython-38-darwin.so 0x000000011443333e DOUBLE_slogdet_single_element + 78
3 _umath_linalg.cpython-38-darwin.so 0x0000000114433d1e DOUBLE_det + 414
4 _multiarray_umath.cpython-38-darwin.so 0x00000001100c9622 PyUFunc_GenericFunction + 19938
5 _multiarray_umath.cpython-38-darwin.so 0x00000001100cb9ed ufunc_generic_call + 189
6 python 0x000000010f40cda1 _PyObject_MakeTpCall + 161
7 python 0x000000010f561ecd call_function + 733
8 python 0x000000010f55fa87 _PyEval_EvalFrameDefault + 48567
9 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
10 python 0x000000010f40d5b9 PyVectorcall_Call + 121
11 _multiarray_umath.cpython-38-darwin.so 0x000000010fe8899d array_implement_array_function + 317
12 python 0x000000010f40d9f8 cfunction_call_varargs + 216
13 python 0x000000010f40cda1 _PyObject_MakeTpCall + 161
14 python 0x000000010f561ecd call_function + 733
15 python 0x000000010f55f9cd _PyEval_EvalFrameDefault + 48381
16 python 0x000000010f5521db _PyEval_EvalCodeWithName + 443
17 python 0x000000010f40e22e _PyFunction_Vectorcall + 398
18 python 0x000000010f561c95 call_function + 165
19 python 0x000000010f55e6c2 _PyEval_EvalFrameDefault + 43506
20 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
21 python 0x000000010f561c95 call_function + 165
22 python 0x000000010f55f9cd _PyEval_EvalFrameDefault + 48381
23 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
24 python 0x000000010f410262 object_vacall + 322
25 python 0x000000010f4106d8 PyObject_CallFunctionObjArgs + 152
26 python 0x000000010f41cc91 property_descr_set + 49
27 python 0x000000010f473346 _PyObject_GenericSetAttrWithDict + 198
28 python 0x000000010f471ec0 PyObject_SetAttr + 96
29 python 0x000000010f55b451 _PyEval_EvalFrameDefault + 30593
30 python 0x000000010f5521db _PyEval_EvalCodeWithName + 443
31 python 0x000000010f40e22e _PyFunction_Vectorcall + 398
32 python 0x000000010f40cbb9 _PyObject_FastCallDict + 233
33 python 0x000000010f495cfe slot_tp_init + 190
34 python 0x000000010f4a4dc1 type_call + 241
35 python 0x000000010f40cda1 _PyObject_MakeTpCall + 161
36 python 0x000000010f561ecd call_function + 733
37 python 0x000000010f55fa87 _PyEval_EvalFrameDefault + 48567
38 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
39 python 0x000000010f561c95 call_function + 165
40 python 0x000000010f55f9cd _PyEval_EvalFrameDefault + 48381
41 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
42 python 0x000000010f40cb2e _PyObject_FastCallDict + 94
43 python 0x000000010f495cfe slot_tp_init + 190
44 python 0x000000010f4a4dc1 type_call + 241
45 python 0x000000010f40cda1 _PyObject_MakeTpCall + 161
46 python 0x000000010f561ecd call_function + 733
47 python 0x000000010f55f9cd _PyEval_EvalFrameDefault + 48381
48 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
49 python 0x000000010f40d5b9 PyVectorcall_Call + 121
50 python 0x000000010f55fbc6 _PyEval_EvalFrameDefault + 48886
51 python 0x000000010f40e172 _PyFunction_Vectorcall + 210
52 python 0x000000010f41235f method_vectorcall + 495
53 python 0x000000010f40d5b9 PyVectorcall_Call + 121
54 QtCore.abi3.so 0x000000011af6e74a QRunnableWrapper::run() + 106
55 QtCore 0x000000011b317fcd QThreadPoolThread::run() + 125
56 QtCore 0x000000011b313ba9 QThreadPrivate::start(void*) + 329
57 libsystem_pthread.dylib 0x00007fff725bb2eb _pthread_body + 126
58 libsystem_pthread.dylib 0x00007fff725be249 _pthread_start + 66
59 libsystem_pthread.dylib 0x00007fff725ba40d thread_start + 13
Thread 10 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000004 rbx: 0x000070000a2860e0 rcx: 0x00000001145e1000 rdx: 0x0000000000000000
rdi: 0x000070000a286020 rsi: 0x0000000000000000 rbp: 0x000070000a286010 rsp: 0x000070000a201900
r8: 0x00000001146e1000 r9: 0x0000000000000000 r10: 0x0000000113d1e298 r11: 0x0000000000000001
r12: 0x00007f896fa77da8 r13: 0x00007f896fa77d60 r14: 0x00000001145e1000 r15: 0x000070000a286160
rip: 0x00000001105e5368 rfl: 0x0000000000010206 cr2: 0x000070000a2019a8
Logical CPU: 2
Error Code: 0x00000006
Trap Number: 14
Binary Images:
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0x7fff725c3000 - 0x7fff725c6ff7 libsystem_sandbox.dylib (851.270.1) <9494594B-5199-3186-82AB-5FF8BED6EE16> /usr/lib/system/libsystem_sandbox.dylib
0x7fff725c7000 - 0x7fff725c9ff3 libsystem_secinit.dylib (30.260.2) <EF1EA47B-7B22-35E8-BD9B-F7003DCB96AE> /usr/lib/system/libsystem_secinit.dylib
0x7fff725ca000 - 0x7fff725d1ff3 libsystem_symptoms.dylib (820.267.1) <03F1C2DD-0F5A-3D9D-88F6-B26C0F94EB52> /usr/lib/system/libsystem_symptoms.dylib
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0x7fff725e9000 - 0x7fff725eeffb libunwind.dylib (35.4) <24A97A67-F017-3CFC-B0D0-6BD0224B1336> /usr/lib/system/libunwind.dylib
0x7fff725ef000 - 0x7fff7261efff libxpc.dylib (1336.261.4) <F01E4F2D-64B0-3678-8A3A-387299E965FE> /usr/lib/system/libxpc.dylib
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 2
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 1561620
thread_create: 0
thread_set_state: 0
VM Region Summary:
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=========== ======= =======
TOTAL 2.2G 2182
TOTAL, minus reserved VM space 2.1G 2182
Model: MacBookPro14,3, BootROM 204.0.0.0.0, 4 processors, Intel Core i7, 3.1 GHz, 16 GB, SMC 2.45f0
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Thunderbolt Bus: MacBook Pro, Apple Inc., 41.1I was able to reproduce this on my local mac, for a conda-installed version (it did not occur for a pip-installed version, and did not occur for the 0.7.1 release).
I wonder if we should install numpy from the anaconda channel, which uses mkl instead of libopenblas. Numpy on the conda-forge channel uses libopenblas.
psavery
commented
4 years ago Re-opening to continue looking at the new crash.
psavery
commented
4 years ago @joelvbernier We discussed the way we are installing the conda dependencies for hexrdgui, and we think that this might be a better command to try out:
conda install -c cjh1 -c anaconda -c conda-forge hexrdguiwith the extra -c anaconda inserted in there. This will try to install the dependencies from anaconda before it tries to find them in conda-forge. The packages in anaconda may work together more reliably than those on conda-forge since anaconda maintains the anaconda channel, but the community maintains the conda-forge channel. Additionally, numpy on the anaconda channel uses mkl rather than libopenblas.
It fixed the problem for me locally on my mac. I hope it is more reliable. Maybe you can try it out and see if it works better for you? You'll need to re-install hexrdgui from scratch I think.
joelvbernier
commented
4 years ago So far on 10.14 this build hasn't crashed. 🤞🏼
There is a crash on Mac that frequently occurs when images are loaded, and you switch image modes using the image mode widget.
I have reproduced the crash both in the package, and locally via a conda install (I did not experience a crash with a pip install, but I didn't test it much either).
Below are the backtraces. It looks like there may be some incompatibility with our versions of numpy and blas.
0.7.1 package:
local conda install: