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HFpostdoc / unstable_states

What do dynamics look like in systems without stable states?
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Mutual Information Ordination #51

Closed MKLau closed 10 years ago

MKLau commented 10 years ago

The mi.Dirichlet function depends on a table of counts for a set of values.

NMDS Plot

Similarity Metric = Mutual Information estimate using a Bayesian Dirichlet prior (a = 0.5)

Minimum stress for given dimensionality: 0.08424578 r^2 for minimum stress configuration: 0.9836413

Source X1 X2 r2 Pr Run 0.99436 0.10602 0.3911 0.001 Prey -0.40429 -0.91463 0.4670 0.001 b -0.97275 0.23184 0.4201 0.001 a -0.97275 0.23184 0.4201 0.001 K -0.30194 0.95333 0.0597 0.005 d -0.44675 0.89466 0.0004 0.969

P values based on 999 permutations.

screen shot 2014-07-02 at 4 28 25 pm

MKLau commented 10 years ago

Implementing the kd-tree based methods of Moniz et al. 2007.