HIPS / Spearmint

Spearmint Bayesian optimization codebase
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Deprecated API verison and other warnings #99

Open thwjoy opened 7 years ago

thwjoy commented 7 years ago

Hi Guys, I tried running the noisy example but I get the following error? I've tried reinstalling the scipy stack but to no avail... Does anyone have any ideas? It keeps outputting the error as if it was part of a loop.

`Minimum expected objective value under model is 162.12392 (+/- 47.70827), at location: NAME TYPE VALUE


            y             float      15.000000   
            x             float      10.000000   

Minimum of observed values is 38.554245, at location: NAME TYPE VALUE


            y             float      7.500000    
            x             float      2.500000    

In file included from /home/tomj/.local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /home/tomj/.local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /home/tomj/.local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /home/tomj/.cache/scipy/python27_compiled/sc_efe69a3fecba151ef9b75ee9eed626cb5351.cpp:23: /home/tomj/.local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]

warning "Using deprecated NumPy API, disable it by " \

^ In file included from /home/tomj/.local/lib/python2.7/site-packages/scipy/weave/blitz/blitz/array-impl.h:37:0, from /home/tomj/.local/lib/python2.7/site-packages/scipy/weave/blitz/blitz/array.h:26, from /home/tomj/.cache/scipy/python27_compiled/scefe69a3fecba151ef9b75ee9eed626cb5351.cpp:11: /home/tomj/.local/lib/python2.7/site-packages/scipy/weave/blitz/blitz/range.h: In member function ‘bool blitz::Range::isAscendingContiguous() const’: /home/tomj/.local/lib/python2.7/site-packages/scipy/weave/blitz/blitz/range.h:120:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] return ((first < last) && (stride == 1) || (first == last)); `

thwjoy commented 7 years ago

Previous issue: https://github.com/HIPS/Spearmint/issues/22

Soloution: Comment out lines 230 - 234 (remove the try and except blocks) and unindent lines 236 and 237 like so:

    #try:
    #    scipy.weave.inline(code, ['x1','x2','gX','ls','M','N','D'], \
    #                       type_converters=scipy.weave.converters.blitz, \
    #                       compiler='gcc')
    #except:
    # The C code weave above is 10x faster than this:
    for i in xrange(0,x1.shape[0]):
        gX[i,:,:] = 2*(x1[i,:] - x2[:,:])*(1/ls)

    return gX`