Adjust paths for out-of-tree running

[martin-ueding]

The paths are currently a mess. I want to change them such that one can run the code outside of the source directory.

[martin-ueding]

At the moment I have the source directory and another directory where I run the comparison. There is a step where I have to manually copy job scripts and JSON output between the directories. I would instead like to have the paths in a way that all the generated files would neatly packed away.

The files that I have are these that are versioned in git:

• Wolfram Language code
• R code
• Job script generator (Python and Jinja) for both projection and number crunching
• List of available irreps in the octahedral group
• Group theory data from Markus
• Helper scripts
• Documentation (manual, notes)

Then these are generated:

• JSON files with projection prescriptions
• Job scripts for both tasks
• HDF5 files containing the contractions
• Markus's projected data in TSV format
• Projection prescriptions
• Projected data
• Comparison PDF plots

In the repository I want to have the directories doc, R, Single-cover and Wolfram_Language, each containing their respective files. Everything else shall be done outside. It would be the easiest to have the working directory somewhere else and refer to the source files from there. This working directory currently is a flat mess. I would like to aim for the following directories in the work directory:

• reference containing Markus's projected data
• correlators containing the HDF5 files
• jobscripts for both the projection as well as the crunching job scripts
• prescriptions for the JSON files containing the projection prescriptions
• projected contains JSON files with just the projected data
• comparison holds the plots that compare

In principle this is not that hard, it just means that I have to adjust all the paths everywhere and do a few iterations until everything is done.

[martin-ueding]

I think I got it all down now, just need to document that.