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HKU-BAL / Clair3-RNA

Clair3-RNA - a long-read small variant caller for RNA sequencing data
BSD 3-Clause "New" or "Revised" License
14 stars 1 forks source link

Support for R10 cDNA? #1

Open jbeaulaurier opened 2 months ago

jbeaulaurier commented 2 months ago

Hello,

Thanks very much for this tool! Are you planning to add a model for R10 cDNA any time soon? I suspect that it would get a lot of use.

Thanks, John

zhengzhenxian commented 2 months ago

Hi John,

To train a R10 cDNA model, we need at least one GIAB R10 cDNA sequencing dataset. Unfortunately, we have not been able to find any publicly available data for this purpose. Pls kindly let us know if you are aware of any sources we might have missed.

Many thanks.

Wishes, Zhenxian