Diploid calls on X - is there a way to get haploid calls in male samples?

HKU-BAL / Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

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Closed bartcharbon closed 1 year ago

bartcharbon commented 1 year ago

Is there a way to instruct clair3 that the input data belong to a male patient, and the calls on X should than be haploid instead of diploid?

aquaskyline commented 1 year ago

No. Postprocessing is needed to either derive or apply gender information.