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HKU-BAL / Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
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Unnecessary warning when phasing is disabled #231

Closed mbhall88 closed 11 months ago

mbhall88 commented 1 year ago

https://github.com/HKU-BAL/Clair3/blob/5708e725c31c208c97c00f8803654381aec1bf7e/preprocess/CheckEnvs.py#L473

Even when I use the --no_phasing_for_fa flag I still get this warning message. Might be good to do a check to see if that option has already been provided before warning?

aquaskyline commented 11 months ago

fixed in v1.0.5