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HKU-BAL / Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
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Is Representation Unification required for all depths for pileup model training? #279

Closed dehui333 closed 8 months ago

dehui333 commented 8 months ago

Hi,

According to revision 1 of the instructions for training the full-alignment model, we only need to run Representation Unification once for the full depth. Since there is no such revision for the pileup training instructions, does it mean it still requires one run of Representation Unification for each depth?

Thank you.

zhengzhenxian commented 8 months ago

Hi,

You only need to run RU for the full depth only, no need for each subsampled depth.

dehui333 commented 8 months ago

I see. Thank you for your help!