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HKU-BAL / Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
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multi bam files calling #71

Closed zhoudreames closed 2 years ago

zhoudreames commented 2 years ago

can i used multiple bam files to calling variants by using clair3 ？

aquaskyline commented 2 years ago

Could you please specify is it multiple bam files of a single sample or multiple samples.

zhoudreames commented 2 years ago

Could you please specify is it multiple bam files of a single sample or multiple samples.

multiple samples

aquaskyline commented 2 years ago

No since Clair3 is not a joint caller. You can output GVCF and then use joint callers for joint calling.

zhoudreames commented 2 years ago

ok,thanks~