bcftools doesn't like tag name '1kGPoN'

HKU-BAL / ClairS-TO

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

BSD 3-Clause "New" or "Revised" License

44 stars 3 forks source link

Closed ymcki closed 8 months ago

ymcki commented 8 months ago

I am getting "[W::bcf_hrec_check] Invalid tag name: "1kGPoN"" error when processing the vcf generated by ClairS-TO pipeline.

My understanding is that bcftools doesn't like any tag that starts with a number.

Can you change the tag name to PoN instead in shared/vcf.py line 24 and src/nonsomatic_tagging.py line 294?

Thanks a lot in advance.

aquaskyline commented 8 months ago

We will change all PoN tags in the next version. v0.0.2 will be released by this week.

ymcki commented 8 months ago

Thanks for your quick reply. Looking forward to trying 0.0.2.

Does 0.0.2 support short indels? It seems to me 0.0.1 doesn't support.

aquaskyline commented 8 months ago

No, still working on that.

ymcki commented 8 months ago

Thanks for your reply. I find that 0.0.2 fixed 1kGPoN problem, so I think this can be closed.