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HKU-BAL / ClairS

ClairS - a deep-learning method for long-read somatic small variant calling
BSD 3-Clause "New" or "Revised" License
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Empty VCF produced by ClairS #2

Closed rowanhowellGE closed 1 year ago

rowanhowellGE commented 1 year ago

Hi,

I ran a set of 21 tumour-normal pairs. All jobs completed successfully but 5 runs returned empty VCFs. Looking into the log file I found the following:

image

I am running ClairS v0.0.1 from dockerhub, accessed on January 23rd.

Thanks, Rowan

zhengzhenxian commented 1 year ago

Hi, Rowan,

Thanks so much for reporting the issue. We have fixed the bug and please try to re-pull the docker image(You might need to remove your local image first using dcoker rmi hkubal/clairs:latest ). If the issue persists, please let us know, thanks!

Zhenxian

rowanhowellGE commented 1 year ago

Thanks, the latest version produced proper VCF files with variants in them.