hl7.terminology.r4#6.0.0/package/NamingSystem-v3-loinc.json includes invalid character "?" in "type"element of "uniqueId"

[kazuhiko-ohe]

IG publisher now always fails by an following error: Error loading /Users/kohe/.fhir/packages/hl7.terminology.r4#6.0.0/package/NamingSystem-v3-loinc.json: Unknown NamingSystemIdentifierType code '?'

The cause is that hl7.terminology.r4#6.0.0/package/NamingSystem-v3-loinc.json includes invalid character "?" in "type"element of "uniqueId". { "resourceType": "NamingSystem", "id": "v3-loinc", 　　：：：： "uniqueId": [ { "type": "oid", "value": "2.16.840.1.113883.6.1", "preferred": true }, { "type": "uri", "value": "http://loinc.org", "preferred": true }, { "type": "?", <=======　ERROR "value": "http://loinc.org/rdf/", "preferred": false } ] }

[nickgarrard]

Same issue

[alejosv]

Same issue and everything stopped.

[paolov]

Same issue!! it worked at least until yesterday around midnight Europe time, then from the morning it keeps failing. We ere on version 1.6.15, tried to upgrade to 1.6.18 but still failing

[grahamegrieve]

This is fixed by a new release

[alejosv]

Not at all, the process continue until end but keep generate the same error:

...
Processing Conformance Resources                                                                     (00:03.093 / 04:02.275, 294Mb)
Load Dependency Info                                                                                 (00:00.002 / 04:02.278, 294Mb)
Load Info                                                                                            (00:00.002 / 04:02.280, 294Mb)
Load Resources                                                                                       (00:00.001 / 04:02.282, 295Mb)
Load Paths                                                                                           (00:00.220 / 04:02.502, 368Mb)
Generating Snapshots                                                                                 (00:00.000 / 04:02.503, 368Mb)
Check R4 / R4B                                                                                       (00:00.001 / 04:02.505, 368Mb)
Assign Comparison Ids                                                                                (00:00.060 / 04:02.565, 378Mb)
Propagating status                                                                                   (00:00.000 / 04:02.566, 378Mb)
Generating Narratives                                                                                (00:00.000 / 04:02.566, 378Mb)
Validating Conformance Resources                                                                     (00:00.751 / 04:03.318, 317Mb)
org.hl7.fhir.exceptions.FHIRException: Error loading /home/ubuntu/.fhir/packages/hl7.terminology.r4#6.0.0/package/NamingSystem-v3-loinc.json: Unknown NamingSystemIdentifierType code '?'
    at org.hl7.fhir.r5.context.SimpleWorkerContext$PackageResourceLoader.loadResource(SimpleWorkerContext.java:126)
    at org.hl7.fhir.r5.context.CanonicalResourceManager$CanonicalResourceProxy.getResource(CanonicalResourceManager.java:98)
    at org.hl7.fhir.r5.context.CanonicalResourceManager$CachedCanonicalResource.getResource(CanonicalResourceManager.java:158)
    at org.hl7.fhir.r5.context.CanonicalResourceManager.getList(CanonicalResourceManager.java:693)
    at org.hl7.fhir.r5.context.BaseWorkerContext.fetchResourcesByType(BaseWorkerContext.java:2515)
    at org.hl7.fhir.igtools.publisher.ValidationServices.resolveURL(ValidationServices.java:306)
    at org.hl7.fhir.validation.instance.InstanceValidator.validateReference(InstanceValidator.java:3121)
    at org.hl7.fhir.validation.instance.InstanceValidator.checkPrimitive(InstanceValidator.java:2775)
    at org.hl7.fhir.validation.instance.InstanceValidator.checkChildByDefinition(InstanceValidator.java:6359)
    at org.hl7.fhir.validation.instance.InstanceValidator.checkChild(InstanceValidator.java:6187)
    at org.hl7.fhir.validation.instance.InstanceValidator.validateElement(InstanceValidator.java:6113)
    at org.hl7.fhir.validation.instance.InstanceValidator.checkChildByDefinition(InstanceValidator.java:6506)
    at org.hl7.fhir.validation.instance.InstanceValidator.checkChild(InstanceValidator.java:6187)
    at org.hl7.fhir.validation.instance.InstanceValidator.validateElement(InstanceValidator.java:6113)
    at org.hl7.fhir.validation.instance.InstanceValidator.checkChildByDefinition(InstanceValidator.java:6506)
    at org.hl7.fhir.validation.instance.InstanceValidator.checkChild(InstanceValidator.java:6187)
    at org.hl7.fhir.validation.instance.InstanceValidator.validateElement(InstanceValidator.java:6113)
    at org.hl7.fhir.validation.instance.InstanceValidator.startInner(InstanceValidator.java:5592)
    at org.hl7.fhir.validation.instance.InstanceValidator.start(InstanceValidator.java:5361)
    at org.hl7.fhir.validation.instance.InstanceValidator.validateResource(InstanceValidator.java:7193)
    at org.hl7.fhir.validation.instance.InstanceValidator.validate(InstanceValidator.java:998)
    at org.hl7.fhir.igtools.publisher.Publisher.validate(Publisher.java:7182)
    at org.hl7.fhir.igtools.publisher.Publisher.validate(Publisher.java:7495)
    at org.hl7.fhir.igtools.publisher.Publisher.validate(Publisher.java:5662)
    at org.hl7.fhir.igtools.publisher.Publisher.loadConformance(Publisher.java:5609)
    at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:1177)
    at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:1016)
    at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:13019)
Caused by: java.lang.IllegalArgumentException: Unknown NamingSystemIdentifierType code '?'
    at org.hl7.fhir.r4.model.NamingSystem$NamingSystemIdentifierTypeEnumFactory.fromCode(NamingSystem.java:327)
    at org.hl7.fhir.r4.model.NamingSystem$NamingSystemIdentifierTypeEnumFactory.fromCode(NamingSystem.java:314)
    at org.hl7.fhir.r4.formats.JsonParser.parseEnumeration(JsonParser.java:104)
    at org.hl7.fhir.r4.formats.JsonParser.parseNamingSystemNamingSystemUniqueIdComponentProperties(JsonParser.java:21605)
    at org.hl7.fhir.r4.formats.JsonParser.parseNamingSystemNamingSystemUniqueIdComponent(JsonParser.java:21597)
    at org.hl7.fhir.r4.formats.JsonParser.parseNamingSystemProperties(JsonParser.java:21588)
    at org.hl7.fhir.r4.formats.JsonParser.parseNamingSystem(JsonParser.java:21522)
    at org.hl7.fhir.r4.formats.JsonParser.parseResource(JsonParser.java:31970)
    at org.hl7.fhir.r4.formats.JsonParserBase.parse(JsonParserBase.java:131)
    at org.hl7.fhir.convertors.loaders.loaderR5.R4ToR5Loader.loadResource(R4ToR5Loader.java:116)
    at org.hl7.fhir.r5.context.SimpleWorkerContext$PackageResourceLoader.loadResource(SimpleWorkerContext.java:118)
    ... 27 more
Check profiles & code systems                                                                        (00:02.045 / 04:05.363, 337Mb)
Check realm rules                                                                                    (00:00.001 / 04:05.365, 337Mb)
Previous Version Comparison                                                                          (00:00.000 / 04:05.365, 337Mb)
Validating Resources                                                                                 (00:00.012 / 04:05.378, 339Mb)
Processing Provenance Records                                                                        (00:00.258 / 04:05.637, 339Mb)
Generating Outputs in /lxcshared/minsacr-ig4.git/output                                              (00:00.001 / 04:05.638, 339Mb)
Generate Native Outputs                                                                              (00:00.713 / 04:06.351, 350Mb)
Run Template                                                                                         (00:32.886 / 04:39.238, 371Mb)
...

[collinmesser]

I'm still getting this error with version 1.6.18 as well.

[grahamegrieve]

the error will keep appearing in the logs until a new version of THO is released.