Open winni2k opened 5 years ago
There is also this sentence in the Supplementary information:
After correcting for multiple testing with the Benjamini-Hochberg procedure, only variants were kept that were significantly mutated over the error model, using a corrected p value cutoff of 0.05.
Does this passage refer to the assign_mutations_to_tree_code_and_files/Shearwater_calls_FDR0.95_all_muts.txt
file?
Or does the passage above refer to this file instead: assign_mutations_to_tree_code_and_files/Shared_mutations.txt
?
Hi, I am wondering if FDR0.95 in the file name
assign_mutations_to_tree_code_and_files/Shearwater_calls_FDR0.95_all_muts.txt
really means a false discovery rate of 95%? This seems high. Is this perhaps shorthand for an FDR of 5%?