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HOA-2 / SlicerNeuroSegmentation

NeuroSegmentation extension for 3D Slicer
BSD 3-Clause "New" or "Revised" License
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Provide example text file (from WMQL) for AL/KS #16

Open lassoan opened 5 years ago

lassoan commented 5 years ago

As discussed here

jarrett-rushmore commented 5 years ago

Import the freesurfer label definitions from the Desikan atlas (Desikan et al 2006)

import FreeSurfer.qry

Define the temporal lobe but ignore it on the output using the |= operator

temporal.side |= ( (entorhinal.side or parahippocampal.side or temporalpole.side or fusiform.side or superiortemporal.side or middletemporal.side or inferiortemporal.side or transversetemporal.side or bankssts.side)
)

temporal_anterior_section.side |= temporal.side and anterior_of(amygdala.side)

Define the frontal regions connected to the uncinate fasciculus

inferior_frontal_gyrus.side |= ( parsopercularis.side or parstriangularis.side or parsorbitalis.side )

orbito_frontal_gyrus.side |= ( lateralorbitofrontal.side or medialorbitofrontal.side )

middle_frontal_gyrus.side |= caudalmiddlefrontal.side or rostralmiddlefrontal.side

Example WMQL Text file

Define bi-laterally the uncinate-fasciculus

uncinate.side = ( endpoints_in(temporal_anterior_section.side) and insula.side and ( inferior_frontal_gyrus.side or middle_frontal_gyrus.side or orbito_frontal_gyrus.side ) )