Running phyloFlash with single end reads led to the following error:
[12:28:23] Reading remappings to summarize taxonomy of unmapped reads
[12:28:23] Reading results of remapping to SPAdes results
[12:28:23] total fwd reads remapping:8900
Illegal division by zero at /local/home/rpetit3/repos/phyloFlash/phyloFlash.pl line 1961.
This was due to not counting remapped reads for single end reads due to the flags being different then the paired end reads.
Also, if CHAO becomes the string 'n.d.' the following warning is produced.
Argument "n.d." isn't numeric in sprintf
Added logic to only use sprintf if $chao1 is not equal to 'n.d.'
Running phyloFlash with single end reads led to the following error:
This was due to not counting remapped reads for single end reads due to the flags being different then the paired end reads.
Also, if CHAO becomes the string 'n.d.' the following warning is produced.
Added logic to only use sprintf if $chao1 is not equal to 'n.d.'