Use PacBio or Nanopore long reads for assembly step

HRGV / phyloFlash

phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.

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Use PacBio or Nanopore long reads for assembly step #118

Open kbseah opened 4 years ago

kbseah commented 4 years ago

In addition to trusted contigs, optionally supply PacBio or Nanopore long reads for assembly step only. This may help in assembly of closely related strains (?).