Conda issue

[Unaimend]

Hi phyloflash team there is an issue with your dependencies. After following your instructions on adding the channels and the strictness for conda. The command

 mamba install -c bioconda phyloflash

leads to

[kbseah]

Thanks for the report. This was puzzling because build tests by Bioconda with the current recipe did not fail.

After running some tests it appears that the environment resolution fails if the defaults channel is not included:

• I was able to reproduce error with Mamba 1.4.2 and the -c nodefaults option, when phyloflash versions 3.4.2 and 3.4.1 were specified
• Environment could be solved for phyloflash version 3.4 with -c nodefaults: dependency conflict appears to be caused by versions pinned in this commit
• Bioconda build tests include main channel
• Environment could be solved when -c defaults option was used instead of -c nodefaults

Could you try running this again with the following command line: mamba install -c conda-forge -c bioconda -c defaults phyloflash=3.4.2 ?

[kbseah]

Updated Bioconda recipe for phyloflash version 3.4.2 build hdfd78af_1 works without defaults channel. Tested the following command: mamba create -p ./phyloflash-test -c bioconda phyloflash on Linux and successfully created environment.

[Unaimend]

Worked for me as well. Thank you for your quick response