HRGV
commented
9 months ago Hoho, super cool that you pushed that through so quickly, just merged it
Thanks, great job. We might want to announce that somewhere though, as this helps quite a bit. Where should we push this?
Cheers H
Prof. Dr. Harald Gruber-Vodicka
Guest Scientist at the Max Planck Institute for Marine Microbiology Celsiusstr. 1 | D-28359 Bremen | Germany
Phone: +49 421 2028-7600 E-Mail: @. @.>
Marine Symbiosis Group, Zoological Institute Christian-Albrechts-University Kiel Am Botanischen Garten 1-9 | D-24118 Kiel | Germany
Phone: +49 431 880 4180 Mobile: +49 151 5788 4139
E-mail: @. @.>
On 27. Oct 2023, at 16:40, Brandon Seah @.***> wrote:
New, modified version of SILVA database where only the main taxonomic ranks (domain, kingdom, phylum...) have been retained. DOI link should work in a day or two.
Resolves problem with Eukaryota taxon strings having too many intermediate ranks and being too long vs. Bacteria and Archaea, which made the taxonomic summary less useful for eukaryotes.
This PR updates readme and docs only, code is not affected so there is no need for a new release.
You can view, comment on, or merge this pull request online at:
https://github.com/HRGV/phyloFlash/pull/188
Commit Summary
17c3567 https://github.com/HRGV/phyloFlash/pull/188/commits/17c3567540d4bf233047aa5f220b56c0911977b1 Link modified db with main taxon ranks only 3f093dd https://github.com/HRGV/phyloFlash/pull/188/commits/3f093ddf9bc7592e32bf58ab8be4cf6d9e39d0c2 Merge remote-tracking branch 'upstream/master' File Changes (3 files https://github.com/HRGV/phyloFlash/pull/188/files) M README.md https://github.com/HRGV/phyloFlash/pull/188/files#diff-b335630551682c19a781afebcf4d07bf978fb1f8ac04c6bf87428ed5106870f5 (4) M docs/index.md https://github.com/HRGV/phyloFlash/pull/188/files#diff-b4d68dc855d0f9476d3f2ee343853bd21bf82ea9960d0cf06661baa244439dd6 (1) M docs/install.md https://github.com/HRGV/phyloFlash/pull/188/files#diff-162b45a313f5f057a233411edbe31e72a13185f4df0ae0e1af2c13521bc05d5a (3) Patch Links:
https://github.com/HRGV/phyloFlash/pull/188.patch https://github.com/HRGV/phyloFlash/pull/188.diff — Reply to this email directly, view it on GitHub https://github.com/HRGV/phyloFlash/pull/188, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACUI2KLRVDWR3DQM542BUGTYBPBXHAVCNFSM6AAAAAA6S54KG6VHI2DSMVQWIX3LMV43ASLTON2WKOZRHE3DKNRXGQZTIMI. You are receiving this because you are subscribed to this thread.
New, modified version of SILVA database where only the main taxonomic ranks (domain, kingdom, phylum...) have been retained. DOI link should work in a day or two.
Resolves problem with Eukaryota taxon strings having too many intermediate ranks and being too long vs. Bacteria and Archaea, which made the taxonomic summary less useful for eukaryotes.
This PR updates readme and docs only, code is not affected so there is no need for a new release.