Update pkgs with R v4.3.0

[johpiip]

This PR updates R version to 4.3.0 and updates all packages to their latest versions. This PR also removes dependency to MRAN package repository as it is being deprecated. Updating packages mean several adaptations to dependencies, such as:

• renv code in automatically updated
• replacing size with linewidth when plotting lines
• specifying crs explicitly in new point data
• filtering with vectors instead of one-column matrices
• adding explicit argument names
• adding explicit legend naming

Results were compared numerically and plots were compared visually.

Accessibility results were not yet compared as we are missing the "before" data due to performance issue. Working on it though!

[johpiip]

Lifecycle warnings:

In scripts/basemap/centers_uusimaa-2050.R:9:

Warning:
Using one column matrices in `filter()` was deprecated in dplyr 1.1.0.
ℹ Please use one dimensional logical vectors instead.

In scripts/figures/links.R:64:

Warning:
Specifying the `id_cols` argument by position was deprecated in tidyr 1.3.0.
ℹ Please explicitly name `id_cols`, like `id_cols = fid`.

[johpiip]

Also this parsing issue in scripts/figures/zones.R, but this may be old and refer to missing columns in syöttödata. I have not yet identified the data frame.

Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.:
  dat <- vroom(...)
  problems(dat)

[johpiip]

Running analysis in graph_accessibility.R...
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.

[johpiip]

Warnings on comments before this were fixed.