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HUPO-PSI / mzIdentML

Repository for mzIdentML and the corresponding examples
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Validation issues with mzidLib_rosetta_2a_uniprot_proteogrouped.mzid #40

Closed edeutsch closed 8 years ago

edeutsch commented 8 years ago

ERROR: cvParam product ion intensity should have units, but it does not! ERROR: cvParam product ion m/z should have units, but it does not! WARNING: MS:1001062 should be 'Mascot MGF format' instead of 'Mascot MGF file' WARNING: MS:1001149 should be 'param: b ion-NH3 DEPRECATED' instead of 'param: b ion-NH3' WARNING: MS:1001150 should be 'param: b ion-H2O DEPRECATED' instead of 'param: b ion-H2O' WARNING: MS:1001151 should be 'param: y ion-NH3 DEPRECATED' instead of 'param: y ion-NH3' WARNING: MS:1001152 should be 'param: y ion-H2O DEPRECATED' instead of 'param: y ion-H2O' WARNING: MS:1001171 should be 'Mascot:score' instead of 'mascot:score' WARNING: MS:1001172 should be 'Mascot:expectation value' instead of 'mascot:expectation value' WARNING: MS:1001189 should be 'modification specificity peptide N-term' instead of 'modification specificity N-term' WARNING: MS:1001199 should be 'Mascot DAT format' instead of 'Mascot DAT file' WARNING: MS:1001316 should be 'Mascot:SigThreshold' instead of 'mascot:SigThreshold' WARNING: MS:1001370 should be 'Mascot:homology threshold' instead of 'mascot:homology threshold' WARNING: MS:1001371 should be 'Mascot:identity threshold' instead of 'mascot:identity threshold' WARNING: MS:1002241 should be 'mzidLib:ProteoGrouper' instead of 'ProteoGrouper' WARNING: MS:1002404 should be 'count of identified proteins' instead of 'count of identified protein'

fawazghali commented 8 years ago

I have update the example file. @edeutsch can you please re-run the validator. Thanks. Fawaz

fawazghali commented 8 years ago

Closed as a duplicate to https://github.com/HUPO-PSI/mzIdentML/issues/53