search

HUPO-PSI / mzML

Repository for mzML and the corresponding examples
28 stars 16 forks source link

mzML validator #3

Closed UKQIDA closed 1 year ago

UKQIDA commented 4 years ago

Hi, I wonder where can I find the mzML validator now. Thanks Da

mwalzer commented 4 years ago

Hi Da, seems all sites where you could do online validation have shut down, at least to my knowledge. If you have singularity or docker on your system, you can use one of the OpenMS containers I built (docker pull mwalzer/openms-batteries-included:V2.3.0) and run the validator. 

XMLValidator -schema <Schema to validate against>  -in <Your mzML file>

You can find the latest schema here Idk about the jmzML validator, though. HTH

UKQIDA commented 4 years ago

Hi Mathias, Thanks. I'll give OpenMS a try and let you know if failed. Da

hechth commented 1 year ago

I think you can basically use any xml validator tool, you just have to pass in the file and the XSD schema.

edeutsch commented 1 year ago

closing for now. Please reopen if this remains an issue.