search

HUPO-PSI / mzTab

mzTab Reporting MS-based Proteomics and Metabolomics Results
https://hupo-psi.github.io/mzTab
37 stars 16 forks source link

Use of identifiers.org #171

Closed andrewrobertjones closed 5 years ago

andrewrobertjones commented 5 years ago

Steffen flagged up on the paper that we might want to recommend the use of identifiers.org, let's discuss while the specs are under review

nilshoffmann commented 5 years ago

Looks like a good fit, since we are using the ontology lookup service already. Did Steffen suggest it for the URIs to external resources?

nilshoffmann commented 5 years ago

This is in the spec doc for small molecule uri as an example.

https://github.com/HUPO-PSI/mzTab/blob/master/specification_document-developments/2_0-Metabolomics-Draft/mzTab_format_specification_2_0-M_draft.adoc#638-uri

nilshoffmann commented 5 years ago

Added a clarifying statement in the 'Referencing external resources' section.

Reporting database identifiers SHOULD be kept compatible to http://identifiers.org/, as is demonstrated in the <> examples, where the database identifier must be preceded by the resource description (prefix) followed by a colon, as specified in the <> metadata section. The possible use of the full identifiers.org URI is shown in the example for uri attribute within the SML section (<>).